cv
Basics
Name | Johannes Roth |
Label | PhD candidate in Computational Cognitive Neuroscience |
johannes@roth24.de | |
Url | https://jroth.space/ |
Summary | I am a PhD candidate at the MPI for Human Cognition and Brain Sciences and University of Gießen. My research focuses on computational cognitive neuroscience, with expertise in machine learning, fMRI study design, and data analysis. |
Work
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2022.01 - Present PhD candidate
MPI for Human Cognition and Brain Sciences
Conducting research in computational cognitive neuroscience. My primary focus is on improving deep phenotyping studies of the human visual system, by closely investigating their experimental and computational aspects.
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2021.06 - 2022.04 Research assistant
ScaDS.AI
I was part of the MPM (Models for Personalized Medicine) project, developing new ways of integrating patient data from multiple sources into a holistic patient model, to be used for precision medicine.
- Implemented a longevity prediction model for prostate cancer that beat state-of-the-art models
- Built and improved models for automated segmentation of brain tumours
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2019.11 - 2021.05 Data scientist (working student)
CHECK24 Vergleichsportal
As a working student, I was treated as a full member of the data science team, working on a wide range of projects to optimize the user experience of the platform. I also briefly worked on the backend team, working on the booking engine.
- Lead development of a image processing micro-service (my personal highlight: building a vector database for reusable image embeddings)
- Optimized recommendation system via a bayesian hyper-parameter search
- Wrote outlier detection algorithsm for hotel pricing data
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2018.10 - 2019.10 Data scientist (working student)
Webdata Solutions GmbH
Webdata Solutions offered a solution for entity matching of products, based purely on text data. As a working student, I developed an image-based product matching pipeline that substantially improved on previously used approaches.
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2018.02 - 2018.08 Data engineer (working student)
Mercateo Services GmbH & Co. KG
Worked on the development of a data warehouse, next to ETL process development and general business intelligence tasks.
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2017.06 - 2018.08 Teaching Assistant "Developing Distributed Systems"
Universität Leipzig
Lead practical exercises and tutorials, assisted with teaching and supervised exams (summer semesters 2017 and 2018).
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2016.10 - 2017.03 Intern
GISA GmbH
As an intern, I familiarized myself with ABAP development. My main project was to develop a SAP Fiori app for electric metering purposes, routing technicians to the next meter to be checked and allowing integrated recording of meter readings.
Volunteer
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2023.03 - 2024.05 Internal PhD representative
MPI for Human Cognition and Brain Sciences
Served as internal PhD representative of the institute, representing the interests of the PhD students to the institutes director and administration.
Education
Publications
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2025.01.01 The scope and limits of fine-grained image and category information in the ventral visual pathway
Journal of Neuroscience
M. Badwal, J. Bergmann, J. Roth, C. Doeller, M. Hebart (2025). Journal of Neuroscience, 45(3).
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2023.01.01 Assessing the feasibility of high stimulus presentation rates for contrasting conditions in functional MRI studies
Journal of Vision
J. Roth, Y. Miyawaki, M. Hebart (2023). Journal of Vision, 23(9), 5070-5070.
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2021.01.01 Multi-plane UNet++ ensemble for glioblastoma segmentation
International MICCAI brainlesion workshop
J. Roth, J. Keller, S. Franke, T. Neumuth, D. Schneider (2021). International MICCAI brainlesion workshop, 285-294.
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2021.01.01 Synthesizing Preferred Stimuli for Individual Voxels in the Human Visual System
Cosyne
J. Roth, K. Seeliger, T. Schmid, M. Hebart (2021). Poster presentation at Cosyne 2021.
Skills
Machine Learning | |
PyTorch | |
Computer Vision | |
NLP | |
Tabular Data | |
sklearn |
Neuroscience | |
fMRI study design | |
fMRI pre-processing | |
fMRI analysis |
Software Development | |
Python | |
Java | |
PHP | |
HTML/CSS/JS | |
React | |
Android |
Data Engineering | |
ETL | |
Data Warehousing | |
AWS | |
Pentaho | |
SQL |
DevOps | |
SLURM | |
Docker | |
Grafana | |
Ubuntu | |
NGINX | |
gUnicorn |
Enterprise Systems | |
SAP | |
ABAP | |
SAP Fiori |
Languages
German | |
Native speaker |
English | |
Fluent |
Interests
Computational Neuroscience | |
Machine Learning | |
fMRI | |
Visual System |